EOD41717

Description : Ribosomal protein L11, C-terminal [Interproscan].

Gene families : OG_01_0003120 (OrthoFinder) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD41717
Cluster	HCCA: Cluster_106

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001339.27	tig00001339_g8284.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder
Cre12.g528750	30793215, RPL12	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	OrthoFinder
Cz05g19100.t1	No alias	Ribosomal protein L11, C-terminal [Interproscan].	0.03	OrthoFinder
Cz05g19110.t1	No alias	Ribosomal protein L11, N-terminal [Interproscan].	0.13	OrthoFinder
OT_03G05460.1	No alias	Ribosomal protein L11, N-terminal; Ribosomal protein...	0.05	OrthoFinder
PTI_14G02490.1	No alias	Ribosomal protein L11, N-terminal; Ribosomal protein...	0.11	OrthoFinder
Sro82_g043980.1	Contig4032.g30989	60S ribosomal protein L12 (Fragment)	0.11	OrthoFinder
SymbC1.scaffold5155.5	5155.5	Ribosomal protein L11, N-terminal [Interproscan].	0.02	OrthoFinder
SymbC1.scaffold7628.1	7628.1	Ribosomal protein L11, C-terminal; Ribosomal protein...	0.02	OrthoFinder
TP02G01920.1	No alias	Ribosomal protein L11, C-terminal; Ribosomal protein...	0.11	OrthoFinder
Vocar.0037s0035.1	32897589	Ribosomal protein L11, C-terminal; Ribosomal protein...	0.03	OrthoFinder
XM_002507253.1	MICPUN_106714, 106714	Ribosomal protein L11, N-terminal; Ribosomal protein...	0.11	OrthoFinder
XM_003054785.1	MicpuC2_30629, 30629	Ribosomal protein L11, N-terminal; Ribosomal protein...	0.09	OrthoFinder
lcl\|LHPG02000012.1_cds_PRW45184.1_1960	PRW45184	60S ribosomal L12-1	0.12	OrthoFinder
lcl\|VRMN01000003.1_cds_KAA8495636.1_1634	KAA8495636	60S ribosomal protein L12	0.15	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006351	transcription, DNA-templated	IEP	Enrichment
BP	GO:0006366	transcription by RNA polymerase II	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Enrichment
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016831	carboxy-lyase activity	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
MF	GO:0030515	snoRNA binding	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Enrichment
MF	GO:0033743	peptide-methionine (R)-S-oxide reductase activity	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:0097659	nucleic acid-templated transcription	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR020783	Ribosomal_L11_C	14	82

External Links

No external refs found!

EOD41717

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation