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EOD41415


Description : Cold-shock protein, DNA-binding [Interproscan].


Gene families : OG_01_0004014 (OrthoFinder) Phylogenetic Tree(s): OG0004014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD41415
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
OT_04G00220.1 No alias Cold-shock protein, DNA-binding [Interproscan]. 0.02 OrthoFinder
Transcript_contig_89883 89883 Hypothetical protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0001401 SAM complex IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 13 73
IPR002059 CSP_DNA-bd 501 546
No external refs found!