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  5. EOD40676

EOD40676


Description : Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0003439 (OrthoFinder) Phylogenetic Tree(s): OG0003439_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD40676
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000792.35 tig00000792_g4187.t1 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 OrthoFinder
Cre10.g420900 30790232 DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 OrthoFinder
Cz12g23200.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Dusal.0096s00002.1 33195824 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
OT_13G02090.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
PTI_13G02560.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.07 OrthoFinder
Sro316_g115490.1 Contig2414.g19755 Dependent RNA helicase 0.06 OrthoFinder
TP01G01290.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.05 OrthoFinder
Transcript_contig_89254 89254 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
Vocar.0016s0046.1 32897876 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.02 OrthoFinder
XM_002503199.1 MICPUN_83076, 83076 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
XM_003061218.1 MicpuC2_19576, 19576 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45450.1_1365 PRW45450 DEAD-box ATP-dependent RNA helicase 28 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496417.1_146 KAA8496417 DEAD-box ATP-dependent RNA helicase 28 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006081 cellular aldehyde metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
MF GO:0008939 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009235 cobalamin metabolic process IEP Enrichment
BP GO:0009236 cobalamin biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 280 379
IPR011545 DEAD/DEAH_box_helicase_dom 131 231
No external refs found!