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  5. Cpa|evm.model.tig00021234.23

Cpa|evm.model.tig00021234.23 (tig00021234_g19397.t1)


Aliases : tig00021234_g19397.t1

Description : Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana


Gene families : OG_01_0001776 (OrthoFinder) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021234.23
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
Cre03.g180800 30788010 Paired amphipathic helix protein Sin3-like 4... 0.03 OrthoFinder
Dusal.0113s00012.1 33191900 Histone deacetylase interacting domain; Sin3,... 0.01 OrthoFinder
PTI_29G00720.1 No alias Paired amphipathic helix; Histone deacetylase... 0.01 OrthoFinder
Sro902_g218120.1 Contig309.g4063 Amphipathic helix protein Sin3-like 0.02 OrthoFinder
Vocar.0015s0303.1 32899190 Paired amphipathic helix; Sin3, C-terminal; Histone... 0.02 OrthoFinder
XM_003055950.1 MicpuC2_70276, 70276 Paired amphipathic helix; Histone deacetylase... 0.01 OrthoFinder
lcl|BLLF01001226.1_cds_GFH17943.1_12420 HaLaN_14668, GFH17943 HDAC_interact domain-containing protein 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
CC GO:0000124 SAGA complex IEP Enrichment
CC GO:0000178 exosome (RNase complex) IEP Enrichment
BP GO:0000723 telomere maintenance IEP Enrichment
MF GO:0003713 transcription coactivator activity IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0032200 telomere organization IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0060249 anatomical structure homeostasis IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
CC GO:0070461 SAGA-type complex IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905354 exoribonuclease complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR003822 PAH 26 69
IPR003822 PAH 109 152
IPR013194 HDAC_interact_dom 299 388
No external refs found!