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EOD37930


Description : RNA polymerase sigma-70 region 2 [Interproscan].


Gene families : OG_01_0000286 (OrthoFinder) Phylogenetic Tree(s): OG0000286_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD37930
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2095 1.2095 RNA polymerase sigma-70 region 1.2; RNA polymerase... 0.02 OrthoFinder
TP06G02100.1 No alias RNA polymerase sigma-70 region 2 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 320 394
No external refs found!