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Description : Ribosomal protein L1/ribosomal biogenesis protein [Interproscan].
Gene families : OG_01_0002737 (OrthoFinder) Phylogenetic Tree(s): OG0002737_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD36382 | |
| Cluster | HCCA: Cluster_287 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00021721.13 | tig00021721_g23212.t1 | No description available | 0.04 | OrthoFinder | |
| Cre07.g314100 | 30774816 | No description available | 0.05 | OrthoFinder | |
| OT_05G05050.1 | No alias | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.05 | OrthoFinder | |
| PTI_04G01660.1 | No alias | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.09 | OrthoFinder | |
| Sro429_g141150.1 | Contig2742.g22047 | Ribosomal L1 domain-containing protein 1 | 0.03 | OrthoFinder | |
| TP14G02420.1 | No alias | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.05 | OrthoFinder | |
| Transcript_contig_78583 | 78583 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0003s0079.1 | 32888998 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002508792.1 | MICPUN_69792, 69792 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.03 | OrthoFinder | |
| XM_003059468.1 | MicpuC2_11268, 11268 | Ribosomal protein L1/ribosomal biogenesis protein [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|VRMN01000006.1_cds_KAA8493741.1_4503 | KAA8493741 | Ribosomal L1 domain-containing protein 1 | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0004748 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | IEP | Enrichment |
| MF | GO:0005488 | binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
| BP | GO:0006260 | DNA replication | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006397 | mRNA processing | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| BP | GO:0010035 | response to inorganic substance | IEP | Enrichment |
| BP | GO:0010038 | response to metal ion | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| BP | GO:0016579 | protein deubiquitination | IEP | Enrichment |
| MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Enrichment |
| MF | GO:0016728 | oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor | IEP | Enrichment |
| MF | GO:0016755 | aminoacyltransferase activity | IEP | Enrichment |
| MF | GO:0016756 | glutathione gamma-glutamylcysteinyltransferase activity | IEP | Enrichment |
| BP | GO:0019748 | secondary metabolic process | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
| BP | GO:0042221 | response to chemical | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0044550 | secondary metabolite biosynthetic process | IEP | Enrichment |
| BP | GO:0046937 | phytochelatin metabolic process | IEP | Enrichment |
| BP | GO:0046938 | phytochelatin biosynthetic process | IEP | Enrichment |
| MF | GO:0061731 | ribonucleoside-diphosphate reductase activity | IEP | Enrichment |
| BP | GO:0070646 | protein modification by small protein removal | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028364 | Ribosomal_L1/biogenesis | 163 | 352 |
| No external refs found! |