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Description : AMP-dependent synthetase/ligase [Interproscan].
Gene families : OG_01_0000387 (OrthoFinder) Phylogenetic Tree(s): OG0000387_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD35174 | |
| Cluster | HCCA: Cluster_226 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre12.g529301 | 30791885 | No description available | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003824 | catalytic activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Enrichment |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Enrichment |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| CC | GO:0005737 | cytoplasm | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006265 | DNA topological change | IEP | Enrichment |
| BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
| BP | GO:0006402 | mRNA catabolic process | IEP | Enrichment |
| BP | GO:0006664 | glycolipid metabolic process | IEP | Enrichment |
| BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
| BP | GO:0006996 | organelle organization | IEP | Enrichment |
| BP | GO:0008104 | protein localization | IEP | Enrichment |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Enrichment |
| MF | GO:0009029 | tetraacyldisaccharide 4'-kinase activity | IEP | Enrichment |
| BP | GO:0009245 | lipid A biosynthetic process | IEP | Enrichment |
| BP | GO:0009247 | glycolipid biosynthetic process | IEP | Enrichment |
| BP | GO:0009311 | oligosaccharide metabolic process | IEP | Enrichment |
| BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Enrichment |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Enrichment |
| BP | GO:0015031 | protein transport | IEP | Enrichment |
| CC | GO:0016592 | mediator complex | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| BP | GO:0033036 | macromolecule localization | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| BP | GO:0045184 | establishment of protein localization | IEP | Enrichment |
| BP | GO:0046467 | membrane lipid biosynthetic process | IEP | Enrichment |
| BP | GO:0046493 | lipid A metabolic process | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| BP | GO:0046907 | intracellular transport | IEP | Enrichment |
| BP | GO:0048519 | negative regulation of biological process | IEP | Enrichment |
| BP | GO:0051180 | vitamin transport | IEP | Enrichment |
| BP | GO:0051276 | chromosome organization | IEP | Enrichment |
| BP | GO:0051641 | cellular localization | IEP | Enrichment |
| BP | GO:0051649 | establishment of localization in cell | IEP | Enrichment |
| BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
| MF | GO:0090482 | vitamin transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| BP | GO:1901269 | lipooligosaccharide metabolic process | IEP | Enrichment |
| BP | GO:1901271 | lipooligosaccharide biosynthetic process | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| BP | GO:1903509 | liposaccharide metabolic process | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000873 | AMP-dep_Synth/Lig | 12 | 220 |
| No external refs found! |