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Aliases : tig00021127_g18721.t1
Description : Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana
Gene families : OG_01_0001374 (OrthoFinder) Phylogenetic Tree(s): OG0001374_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00021127.44 | |
| Cluster | HCCA: Cluster_14 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cz12g10170.t1 | No alias | Lycopene cyclase protein [Interproscan]. | 0.01 | OrthoFinder | |
| Vocar.0003s0250.1 | 32889025 | Lycopene cyclase protein [Interproscan]. | 0.01 | OrthoFinder | |
| XM_003063676.1 | MicpuC2_49021, 49021 | Lycopene beta cyclase | 0.01 | OrthoFinder | |
| lcl|VRMN01000004.1_cds_KAA8495109.1_3639 | KAA8495109 | Lycopene beta cyclase, chloroplastic/chromoplastic | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000105 | histidine biosynthetic process | IEP | Enrichment |
| BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | Enrichment |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Enrichment |
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003997 | acyl-CoA oxidase activity | IEP | Enrichment |
| MF | GO:0004150 | dihydroneopterin aldolase activity | IEP | Enrichment |
| MF | GO:0004399 | histidinol dehydrogenase activity | IEP | Enrichment |
| MF | GO:0004411 | homogentisate 1,2-dioxygenase activity | IEP | Enrichment |
| MF | GO:0004470 | malic enzyme activity | IEP | Enrichment |
| MF | GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | IEP | Enrichment |
| MF | GO:0005525 | GTP binding | IEP | Enrichment |
| CC | GO:0005777 | peroxisome | IEP | Enrichment |
| BP | GO:0006082 | organic acid metabolic process | IEP | Enrichment |
| BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
| BP | GO:0006402 | mRNA catabolic process | IEP | Enrichment |
| BP | GO:0006520 | cellular amino acid metabolic process | IEP | Enrichment |
| BP | GO:0006547 | histidine metabolic process | IEP | Enrichment |
| BP | GO:0006558 | L-phenylalanine metabolic process | IEP | Enrichment |
| BP | GO:0006559 | L-phenylalanine catabolic process | IEP | Enrichment |
| BP | GO:0006570 | tyrosine metabolic process | IEP | Enrichment |
| BP | GO:0006605 | protein targeting | IEP | Enrichment |
| BP | GO:0006612 | protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006613 | cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006614 | SRP-dependent cotranslational protein targeting to membrane | IEP | Enrichment |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
| MF | GO:0008252 | nucleotidase activity | IEP | Enrichment |
| MF | GO:0008253 | 5'-nucleotidase activity | IEP | Enrichment |
| BP | GO:0009056 | catabolic process | IEP | Enrichment |
| BP | GO:0009063 | cellular amino acid catabolic process | IEP | Enrichment |
| BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Enrichment |
| BP | GO:0009074 | aromatic amino acid family catabolic process | IEP | Enrichment |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Enrichment |
| BP | GO:0009987 | cellular process | IEP | Enrichment |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Enrichment |
| BP | GO:0016054 | organic acid catabolic process | IEP | Enrichment |
| BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Enrichment |
| MF | GO:0016615 | malate dehydrogenase activity | IEP | Enrichment |
| MF | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | IEP | Enrichment |
| MF | GO:0016634 | oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor | IEP | Enrichment |
| MF | GO:0016714 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced pteridine as one donor, and incorporation of one atom of oxygen | IEP | Enrichment |
| MF | GO:0016832 | aldehyde-lyase activity | IEP | Enrichment |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
| BP | GO:0019752 | carboxylic acid metabolic process | IEP | Enrichment |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | Enrichment |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
| BP | GO:0033365 | protein localization to organelle | IEP | Enrichment |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| CC | GO:0042579 | microbody | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| BP | GO:0043436 | oxoacid metabolic process | IEP | Enrichment |
| BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
| BP | GO:0044248 | cellular catabolic process | IEP | Enrichment |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:0044281 | small molecule metabolic process | IEP | Enrichment |
| BP | GO:0044282 | small molecule catabolic process | IEP | Enrichment |
| BP | GO:0045047 | protein targeting to ER | IEP | Enrichment |
| BP | GO:0046395 | carboxylic acid catabolic process | IEP | Enrichment |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
| MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | Enrichment |
| BP | GO:0051668 | localization within membrane | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0070972 | protein localization to endoplasmic reticulum | IEP | Enrichment |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Enrichment |
| BP | GO:0072599 | establishment of protein localization to endoplasmic reticulum | IEP | Enrichment |
| BP | GO:0072657 | protein localization to membrane | IEP | Enrichment |
| BP | GO:0090150 | establishment of protein localization to membrane | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| BP | GO:0110154 | RNA decapping | IEP | Enrichment |
| BP | GO:0110156 | methylguanosine-cap decapping | IEP | Enrichment |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Enrichment |
| BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
| BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Enrichment |
| MF | GO:1901681 | sulfur compound binding | IEP | Enrichment |
| BP | GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | IEP | Enrichment |
| BP | GO:1902222 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |