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  5. EOD32718

EOD32718


Description : Ribosomal protein L4/L1e [Interproscan].


Gene families : OG_01_0001152 (OrthoFinder) Phylogenetic Tree(s): OG0001152_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD32718
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001003.35 tig00001003_g6290.t1 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum 0.03 OrthoFinder
Cre11.g479500 30775927, PRPL4 Protein biosynthesis.organelle translation... 0.06 OrthoFinder
Cz03g02040.t1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
OT_16G00330.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
PTI_07G00540.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Sro279_g106690.1 Contig3140.g24908 Protein L4 0.03 OrthoFinder
Sro51_chlor_g029480.1 Rpl4 Rpl4 0.02 OrthoFinder
TPCG02350.1 No alias Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
Vocar.0048s0048.1 32893676 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
XM_002503039.1 MICPUN_59033, 59033 Ribosomal protein L4/L1e [Interproscan]. 0.04 OrthoFinder
XM_003061053.1 MicpuC2_48008, 48008 Ribosomal protein L4/L1e [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01001390.1_cds_GFH19003.1_13480 HaLaN_15888, GFH19003 Ribosomal protein L4/L1e [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45732.1_1468 PRW45732 50S ribosomal L4 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 61 238
No external refs found!