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  5. Cpa|evm.model.tig00021127.127

Cpa|evm.model.tig00021127.127 (tig00021127_g18807.t1)


Aliases : tig00021127_g18807.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL6 component


Gene families : OG_01_0002935 (OrthoFinder) Phylogenetic Tree(s): OG0002935_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021127.127
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre01.g011000 30788989, RPL6 Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 OrthoFinder
Cz11g06080.t1 No alias 60S ribosomal protein L6E [Interproscan]. 0.15 OrthoFinder
Dusal.0521s00006.1 33197395 60S ribosomal protein L6E [Interproscan]. 0.23 OrthoFinder
OT_09G04060.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.15 OrthoFinder
PTI_04G05480.1 No alias 60S ribosomal protein L6E [Interproscan]. 0.19 OrthoFinder
Sro189_g081570.1 Contig744.g8521 60S ribosomal protein L6 0.3 OrthoFinder
Sro68_g038220.1 Contig2027.g17403 60S ribosomal protein L6 0.24 OrthoFinder
SymbC1.scaffold2305.2 2305.2 60S ribosomal protein L6E [Interproscan]. 0.06 OrthoFinder
Vocar.0013s0019.1 32896343 60S ribosomal protein L6E [Interproscan]. 0.05 OrthoFinder
XM_002504012.1 MICPUN_108678, 108678 60S ribosomal protein L6E [Interproscan]. 0.18 OrthoFinder
XM_003059548.1 MicpuC2_49628, 49628 60S ribosomal protein L6E [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01002839.1_cds_GFH25525.1_20002 HaLaN_23505, GFH25525 Component of cytosolic 80S ribosome and 60S large subunit 0.03 OrthoFinder
lcl|LHPG02000006.1_cds_PRW57743.1_8428 PRW57743 60S ribosomal L6 0.1 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495926.1_1924 KAA8495926 60S ribosomal protein L6 0.16 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005568 Ribosomal_L6_N 3 41
IPR000915 60S_ribosomal_L6E 144 250
No external refs found!