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  5. EOD31600

EOD31600


Description : Helicase, C-terminal; ATP-dependent DNA helicase RecQ, zinc-binding domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD31600
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000615.26 tig00000615_g2555.t1 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020848.31 tig00020848_g14558.t1 ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana 0.01 OrthoFinder
SymbC1.scaffold2529.4 2529.4 Helicase, C-terminal [Interproscan]. 0.01 OrthoFinder
Transcript_contig_2691 2691 Helicase, C-terminal; HRDC domain; RQC domain;... 0.01 OrthoFinder
XM_003055181.1 MicpuC2_12297, 12297 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.01 OrthoFinder
XM_003062439.1 MicpuC2_29315, 29315 Helicase, C-terminal; ATP-dependent DNA helicase RecQ,... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
MF GO:0009916 alternative oxidase activity IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0070566 adenylyltransferase activity IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 11 176
IPR001650 Helicase_C 230 325
IPR032284 RecQ_Zn-bd 358 401
No external refs found!