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  5. Cpa|evm.model.tig00021122.18

Cpa|evm.model.tig00021122.18 (tig00021122_g18449.t1)


Aliases : tig00021122_g18449.t1

Description : DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana


Gene families : OG_01_0001221 (OrthoFinder) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021122.18
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cre12.g505200 30792990 DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 OrthoFinder
EOD20644 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
OT_12G00590.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.04 OrthoFinder
XM_002503117.1 MICPUN_83132, 83132 Dead-box ATP-dependent RNA helicase 0.03 OrthoFinder
XM_003061132.1 MicpuC2_44623, 44623 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56671.1_9850 PRW56671 DEAD-box ATP-dependent RNA helicase 10 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006643 membrane lipid metabolic process IEP Enrichment
BP GO:0006665 sphingolipid metabolic process IEP Enrichment
BP GO:0006672 ceramide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008375 acetylglucosaminyltransferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 225 293
IPR011545 DEAD/DEAH_box_helicase_dom 26 192
No external refs found!