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  5. EOD29477

EOD29477


Description : E3 ubiquitin ligase [Ensembl].


Gene families : OG_01_0000020 (OrthoFinder) Phylogenetic Tree(s): OG0000020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD29477
Cluster HCCA: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.12 tig00000711_g3373.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cpa|evm.model.tig00020875.8 tig00020875_g14885.t1 Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana 0.02 OrthoFinder
EOD04355 No alias Regulator of chromosome condensation (RCC1) repeat;... 0.03 OrthoFinder
EOD12398 No alias Regulator of chromosome condensation, RCC1 [Interproscan]. 0.03 OrthoFinder
Transcript_contig_54555 54555 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_79616 79616 Regulator of chromosome condensation, RCC1 [Interproscan]. 0.01 OrthoFinder
Vocar.0001s1245.1 32885949 Ankyrin repeat-containing domain; Regulator of... 0.02 OrthoFinder
lcl|BLLF01000535.1_cds_GFH12745.1_7222 HaLaN_08488, GFH12745 UV-resistance 8 protein 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Enrichment
CC GO:0005789 endoplasmic reticulum membrane IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Enrichment
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
CC GO:0031090 organelle membrane IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 380 429
IPR000408 Reg_chr_condens 432 462
IPR000408 Reg_chr_condens 330 377
IPR000408 Reg_chr_condens 276 325
IPR000408 Reg_chr_condens 174 221
IPR000408 Reg_chr_condens 224 273
No external refs found!