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  5. EOD29418

EOD29418


Description : ATP-dependent RNA helicase Ski2, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD29418
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cre11.g482483 30775678 RNA processing.RNA decay.exosome complex.associated... 0.01 OrthoFinder
PTI_02G06900.1 No alias rRNA-processing arch domain; ATP-dependent RNA helicase... 0.01 OrthoFinder
Sro587_g171320.1 Contig2233.g18555 Viralicidic activity 2-like 2 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61094.1_711 PRW61094 Superkiller viralicidic activity 2-like 2 isoform B 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61095.1_712 PRW61095 Superkiller viralicidic activity 2-like 2 isoform A 0.01 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51149.1_969 PRW51149 Antiviral helicase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
MF GO:0005381 iron ion transmembrane transporter activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
BP GO:0034755 iron ion transmembrane transport IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 172 323
IPR012961 Ski2_C 858 1018
No external refs found!