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  5. Cpa|evm.model.tig00000157.111

Cpa|evm.model.tig00000157.111 (tig00000157_g9709.t1)


Aliases : tig00000157_g9709.t1

Description : Cullin-4 OS=Arabidopsis thaliana


Gene families : OG_01_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00000157.111
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cre07.g324050 30775299, CUL1 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cre17.g734400 30781960, CUL3 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder
Cz09g29020.t1 No alias Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
Transcript_contig_54536 54536 Cullin protein, neddylation domain; Cullin, N-terminal... 0.02 OrthoFinder
XM_002504697.1 MICPUN_84769, 84769 Cullin protein, neddylation domain; Cullin, N-terminal... 0.03 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20452.1_5392 PRW20452 Cullin family 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Enrichment
CC GO:0000229 cytoplasmic chromosome IEP Enrichment
CC GO:0000262 mitochondrial chromosome IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007005 mitochondrion organization IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR019559 Cullin_neddylation_domain 198 260
IPR001373 Cullin_N 1 167
No external refs found!