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  5. EOD28493

EOD28493


Description : U3 small nucleolar RNA-associated protein 15, C-terminal; WD40 repeat [Interproscan].


Gene families : OG_01_0002703 (OrthoFinder) Phylogenetic Tree(s): OG0002703_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD28493
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020927.23 tig00020927_g15952.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre03.g196850 30787480 Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 OrthoFinder
Cz10g12180.t1 No alias U3 small nucleolar RNA-associated protein 15,... 0.05 OrthoFinder
EOD39299 No alias U3 small nucleolar RNA-associated protein 15,... 0.03 OrthoFinder
OT_15G01400.1 No alias WD40 repeat; U3 small nucleolar RNA-associated protein... 0.11 OrthoFinder
PTI_02G05950.1 No alias U3 small nucleolar RNA-associated protein 15,... 0.09 OrthoFinder
Sro203_g085690.1 Contig1270.g11863 Associated protein 15 homolog 0.1 OrthoFinder
Vocar.0011s0312.1 32895259 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.02 OrthoFinder
XM_002502959.1 MICPUN_108508, 108508 WD40 repeat; U3 small nucleolar RNA-associated protein... 0.06 OrthoFinder
XM_003058696.1 MicpuC2_67965, 67965 U3 small nucleolar RNA-associated protein 15,... 0.05 OrthoFinder
lcl|BLLF01002027.1_cds_GFH22370.1_16847 HaLaN_19826, GFH22370 WD_REPEATS_REGION domain-containing protein 0.05 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497875.1_6828 KAA8497875 U3 small nucleolar RNA-associated protein 15-like 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Enrichment
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Enrichment
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR018983 U3_snoRNA-assocProt_15_C 347 485
IPR001680 WD40_repeat 113 148
IPR001680 WD40_repeat 153 197
No external refs found!