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  5. EOD28310

EOD28310


Description : Chromodomain helicase DNA binding protein [Ensembl].


Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD28310
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000802.67 tig00000802_g4315.t2 Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g179300 30786668 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
Cre08.g377200 30773522 CHD3-type chromatin-remodeling factor PICKLE... 0.02 OrthoFinder
Cre09.g390000 30781417 RNA biosynthesis.transcriptional activation.PHD finger... 0.02 OrthoFinder
Cz02g31160.t1 No alias Helicase, C-terminal; SLIDE domain; SNF2-related,... 0.02 OrthoFinder
Cz07g13180.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
Dusal.0024s00040.1 33202173 SNF2-related, N-terminal domain [Interproscan]. 0.03 OrthoFinder
PTI_04G04910.1 No alias Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
PTI_10G00070.1 No alias Helicase, C-terminal; High mobility group box domain;... 0.03 OrthoFinder
PTI_10G02350.1 No alias Chromo domain; SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Sro272_g104840.1 Contig2144.g18025 Chromodomain-helicase-DNA-binding protein 0.04 OrthoFinder
Sro29_g019150.1 Contig1384.g12758 CHD3-type chromatin-remodeling factor CHR7 0.03 OrthoFinder
Sro2_g001340.1 Contig467.g6292 CHD3-type chromatin-remodeling factor PICKLE 0.03 OrthoFinder
Sro358_g125960.1 Contig1210.g11383 Probable chromatin-remodeling complex ATPase chain 0.03 OrthoFinder
Sro463_g148220.1 Contig3968.g30431 Probable chromatin-remodeling complex ATPase chain 0.02 OrthoFinder
Sro566_g167850.1 Contig3739.g28680 ISWI chromatin-remodeling complex ATPase ISW2 0.03 OrthoFinder
XM_003055229.1 MicpuC2_12258, 12258 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.03 OrthoFinder
XM_003058971.1 MicpuC2_58412, 58412 SNF2 super family 0.02 OrthoFinder
XM_003061140.1 MicpuC2_28265, 28265 SNF2 super family 0.01 OrthoFinder
XM_003061313.1 MicpuC2_50939, 50939 SNF2 super family 0.02 OrthoFinder
lcl|BLLF01003363.1_cds_GFH27140.1_21617 HaLaN_25412, GFH27140 SNF2-related, N-terminal domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60864.1_4118 PRW60864 SNF2 super family 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56740.1_9705 PRW56740 Chromatin-remodeling complex ATPase chain 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046486 glycerolipid metabolic process IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
InterPro domains Description Start Stop
IPR000330 SNF2_N 1 150
IPR001650 Helicase_C 174 284
No external refs found!