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  5. Cpa|evm.model.tig00021073.40

Cpa|evm.model.tig00021073.40 (tig00021073_g18049.t1)


Aliases : tig00021073_g18049.t1

Description : RNA processing.organelle machineries.ribonuclease activities.PNP polynucleotide phosphorylase


Gene families : OG_01_0000856 (OrthoFinder) Phylogenetic Tree(s): OG0000856_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021073.40
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Sro4_g002940.1 Contig3815.g29212 Polyribonucleotide nucleotidyltransferase 0.01 OrthoFinder
Sro968_g226120.1 Contig1973.g16887 Polyribonucleotide nucleotidyltransferase 0.01 OrthoFinder
XM_002500434.1 MICPUN_79594, 79594 S1 domain; K Homology domain, type 1; Exoribonuclease,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 180 243
IPR015848 PNPase_PH_RNA-bd_bac/org-type 296 356
IPR001247 ExoRNase_PH_dom1 359 492
IPR001247 ExoRNase_PH_dom1 48 176
No external refs found!