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Description : WD40 repeat [Interproscan].
Gene families : OG_01_0003140 (OrthoFinder) Phylogenetic Tree(s): OG0003140_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD27407 | |
| Cluster | HCCA: Cluster_112 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00000852.39 | tig00000852_g5050.t1 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.07 | OrthoFinder | |
| Cre13.g606850 | 30784338 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.14 | OrthoFinder | |
| Cz05g19220.t1 | No alias | WD40 repeat [Interproscan]. | 0.1 | OrthoFinder | |
| Dusal.1403s00002.1 | 33199971 | WD40 repeat [Interproscan]. | 0.01 | OrthoFinder | |
| OT_04G04050.1 | No alias | WD40 repeat [Interproscan]. | 0.11 | OrthoFinder | |
| PTI_03G06630.1 | No alias | WD40 repeat [Interproscan]. | 0.03 | OrthoFinder | |
| Sro26_g017510.1 | Contig2432.g19922 | RNA-associated protein 4 homolog | 0.15 | OrthoFinder | |
| TP01G10340.1 | No alias | Hypothetical protein | 0.02 | OrthoFinder | |
| Transcript_contig_57546 | 57546 | WD40 repeat [Interproscan]. | 0.04 | OrthoFinder | |
| Vocar.0043s0033.1 | 32886908 | Hypothetical protein | 0.04 | OrthoFinder | |
| XM_002505872.1 | MICPUN_104036, 104036 | WD40 repeat [Interproscan]. | 0.13 | OrthoFinder | |
| XM_003057188.1 | MicpuC2_46667, 46667 | WD40 repeat [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|BLLF01001930.1_cds_GFH21916.1_16393 | HaLaN_19299, GFH21916 | WD_REPEATS_REGION domain-containing protein | 0.02 | OrthoFinder | |
| lcl|BLLF01009397.1_cds_GFH33712.1_28189 | HaLaN_33121, GFH33712 | WD_REPEATS_REGION domain-containing protein | 0.01 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61122.1_641 | PRW61122 | WD40 repeat | 0.07 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0001401 | SAM complex | IEP | Enrichment |
| BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
| BP | GO:0003333 | amino acid transmembrane transport | IEP | Enrichment |
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003724 | RNA helicase activity | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | Enrichment |
| CC | GO:0005742 | mitochondrial outer membrane translocase complex | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006364 | rRNA processing | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006865 | amino acid transport | IEP | Enrichment |
| MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
| BP | GO:0015849 | organic acid transport | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| BP | GO:0016072 | rRNA metabolic process | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Enrichment |
| CC | GO:0030684 | preribosome | IEP | Enrichment |
| CC | GO:0030688 | preribosome, small subunit precursor | IEP | Enrichment |
| CC | GO:0032040 | small-subunit processome | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0034457 | Mpp10 complex | IEP | Enrichment |
| BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Enrichment |
| BP | GO:0042254 | ribosome biogenesis | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Enrichment |
| BP | GO:0044085 | cellular component biogenesis | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
| CC | GO:0098798 | mitochondrial protein-containing complex | IEP | Enrichment |
| CC | GO:0098799 | outer mitochondrial membrane protein complex | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
| BP | GO:1903825 | organic acid transmembrane transport | IEP | Enrichment |
| BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Enrichment |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001680 | WD40_repeat | 183 | 207 |
| No external refs found! |