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  5. EOD26794

EOD26794


Description : Helicase, C-terminal; Domain of unknown function DUF1605; Helicase-associated domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD26794
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021589.28 tig00021589_g22735.t1 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.03 OrthoFinder
Cz12g28100.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz14g08150.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Cz16g14170.t1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Dusal.0020s00025.1 33193741 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.04 OrthoFinder
SymbC1.scaffold3931.2 3931.2 DEAD/DEAH box helicase domain; Helicase, C-terminal... 0.01 OrthoFinder
SymbC1.scaffold4319.1 4319.1 DEAD/DEAH box helicase domain; Domain of unknown... 0.01 OrthoFinder
TP06G06120.1 No alias Domain of unknown function DUF1605; Helicase,... 0.01 OrthoFinder
Transcript_contig_53761 53761 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.02 OrthoFinder
Vocar.0005s0082.1 32884001 Domain of unknown function DUF1605; Helicase,... 0.02 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495728.1_1726 KAA8495728 Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Enrichment
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003994 aconitate hydratase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006099 tricarboxylic acid cycle IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
MF GO:0016835 carbon-oxygen lyase activity IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 246 399
IPR001650 Helicase_C 447 538
IPR007502 Helicase-assoc_dom 608 697
IPR011709 DUF1605 757 831
No external refs found!