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  5. EOD25362

EOD25362


Description : ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp, N-terminal [Interproscan].


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD25362
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cre12.g533351 30793290 Chaperone protein ClpB3, chloroplastic OS=Arabidopsis thaliana 0.01 OrthoFinder
Cz09g12050.t1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.02 OrthoFinder
Cz09g26150.t1 No alias Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.01 OrthoFinder
Cz16g16110.t1 No alias ATPase, AAA-type, core; Clp, N-terminal; ClpA/ClpB, AAA... 0.01 OrthoFinder
OT_01G00710.1 No alias ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal;... 0.01 OrthoFinder
Sro20_g014290.1 Contig2954.g23459 Protein ClpB 0.01 OrthoFinder
SymbC1.scaffold1.1846 1.1846 Clp ATPase, C-terminal; ATPase, AAA-type, core; Clp,... 0.02 OrthoFinder
SymbC1.scaffold16.59 16.59 Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.01 OrthoFinder
Transcript_contig_54694 54694 ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal;... 0.01 OrthoFinder
Vocar.0001s1199.1 32884396 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.03 OrthoFinder
lcl|LHPG02000001.1_cds_PRW61387.1_219 PRW61387 ATP-dependent Clp protease ATP-binding subunit-like... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005047 signal recognition particle binding IEP Enrichment
CC GO:0005785 signal recognition particle receptor complex IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016805 dipeptidase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR004176 Clp_R_dom 193 218
IPR004176 Clp_R_dom 80 129
IPR003959 ATPase_AAA_core 564 677
IPR003959 ATPase_AAA_core 280 409
IPR041546 ClpA/ClpB_AAA_lid 435 498
No external refs found!