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  5. Cpa|evm.model.tig00021043.13

Cpa|evm.model.tig00021043.13 (tig00021043_g17622.t1)


Aliases : tig00021043_g17622.t1

No description available


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021043.13
Cluster HCCA: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
Cre01.g024200 30788323 RNA processing.RNA 3-end polyadenylation.Cleavage... 0.02 OrthoFinder
Cre02.g079400 30785182 No description available 0.03 OrthoFinder
Cre06.g288750 30780037, CBP20 No description available 0.03 OrthoFinder
Cz05g06060.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz06g28140.t1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Cz17g16110.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0322s00004.1 33197814 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
EOD23470 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0001s0026.1 32885509 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0004s0355.1 32889625 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0037s0092.1 32897541 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_002504161.1 MICPUN_76997, 76997 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003056785.1 MicpuC2_9129, 9129 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
CC GO:0005672 transcription factor TFIIA complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 6 71
No external refs found!