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  5. Cpa|evm.model.tig00021038.78

Cpa|evm.model.tig00021038.78 (tig00021038_g17567.t1)


Aliases : tig00021038_g17567.t1

Description : RNA biosynthesis.transcriptional activation.MYB superfamily.MYB transcription factor


Gene families : OG_01_0000018 (OrthoFinder) Phylogenetic Tree(s): OG0000018_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021038.78
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Cre16.g677382 30777694 RNA biosynthesis.transcriptional activation.MYB... 0.03 OrthoFinder
Cz14g00040.t1 No alias SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_78900 78900 SANT/Myb domain [Interproscan]. 0.01 OrthoFinder
Vocar.0002s0488.1 32891022 SANT/Myb domain [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499442.1_8395 KAA8499442 Transcription factor MYB52 0.03 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494854.1_3384 KAA8494854 Transcription factor 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006072 glycerol-3-phosphate metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0042255 ribosome assembly IEP Enrichment
BP GO:0042256 mature ribosome assembly IEP Enrichment
BP GO:0046168 glycerol-3-phosphate catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
MF GO:0047952 glycerol-3-phosphate dehydrogenase [NAD(P)+] activity IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0052646 alditol phosphate metabolic process IEP Enrichment
BP GO:0070925 organelle assembly IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901136 carbohydrate derivative catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001005 SANT/Myb 95 139
IPR001005 SANT/Myb 64 89
No external refs found!