1. Home
  2. Species
  3. Emiliania huxleyi
  4. Sequence
  5. EOD22460

EOD22460


Description : Tetratricopeptide repeat; PRP1 splicing factor, N-terminal [Interproscan].


Gene families : OG_01_0001986 (OrthoFinder) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD22460
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.19 tig00000880_g5175.t1 Protein STABILIZED1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre14.g633650 30776534, PRP6 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder
Cz07g30240.t1 No alias PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.02 OrthoFinder
Dusal.0061s00032.1 33190668 PRP1 splicing factor, N-terminal [Interproscan]. 0.01 OrthoFinder
Sro987_g228260.1 Contig1137.g10933 mRNA-processing factor 6 0.04 OrthoFinder
Transcript_contig_56067 56067 PRP1 splicing factor, N-terminal [Interproscan]. 0.01 OrthoFinder
Vocar.0022s0221.1 32891963 PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.03 OrthoFinder
XM_002505345.1 MICPUN_63388, 63388 MRNA splicing protein 0.01 OrthoFinder
XM_003059615.1 MicpuC2_70858, 70858 MRNA splicing protein 0.02 OrthoFinder
lcl|BLLF01000031.1_cds_GFH06286.1_763 HaLaN_00893, GFH06286 TPR_REGION domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56239.1_10024 PRW56239 STABILIZED1 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016836 hydro-lyase activity IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR010491 PRP1_N 16 143
No external refs found!