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  5. EOD21743

EOD21743


Description : Cleavage/polyadenylation specificity factor, A subunit, C-terminal; Mono-functional DNA-alkylating methyl methanesulfonate N-term [Interproscan].


Gene families : OG_01_0002784 (OrthoFinder) Phylogenetic Tree(s): OG0002784_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD21743
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
Cre10.g432000 30790662, DDB1 Protein degradation.peptide tagging.Ubiquitin... 0.04 OrthoFinder
Dusal.0512s00003.1 33192095 Mono-functional DNA-alkylating methyl methanesulfonate... 0.01 OrthoFinder
OT_10G03340.1 No alias Mono-functional DNA-alkylating methyl methanesulfonate... 0.02 OrthoFinder
Sro204_g085800.1 Contig1096.g10610 Damage-binding protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006013 mannose metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006188 IMP biosynthetic process IEP Enrichment
BP GO:0006189 'de novo' IMP biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046040 IMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 782 1089
No external refs found!