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  5. EOD21473

EOD21473


Description : Radical SAM, C-terminal extension; Radical SAM [Interproscan].


Gene families : OG_01_0002488 (OrthoFinder) Phylogenetic Tree(s): OG0002488_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD21473
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Cz02g36320.t1 No alias Radical SAM; GNAT domain; Radical SAM, C-terminal... 0.02 OrthoFinder
Transcript_contig_59729 59729 Radical SAM, C-terminal extension; Radical SAM [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0051536 iron-sulfur cluster binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
MF GO:0008238 exopeptidase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
BP GO:0016192 vesicle-mediated transport IEP Enrichment
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
InterPro domains Description Start Stop
IPR007197 rSAM 154 343
IPR032432 Radical_SAM_C 363 442
No external refs found!