EOD21342

Description : RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 1; RNA polymerase Rpb1, domain 5; RNA polymerase, alpha subunit [Interproscan].

Gene families : OG_01_0000697 (OrthoFinder) Phylogenetic Tree(s): OG0000697_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD21342
Cluster	HCCA: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00022075.5	tig00022075_g23567.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00022075.6	tig00022075_g23568.t1	DNA-directed RNA polymerase III subunit 1 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cre03.g165750	30786879	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.01	OrthoFinder
Cz01g33020.t1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase, alpha...	0.06	OrthoFinder
Cz03g13040.t1	No alias	RNA polymerase II, heptapeptide repeat, eukaryotic; RNA...	0.04	OrthoFinder
Dusal.0157s00011.1	33200035	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.01	OrthoFinder
Dusal.0157s00013.1	33200051	RNA polymerase Rpb1, domain 5; RNA polymerase Rpb1,...	0.03	OrthoFinder
Dusal.0197s00003.1	33188524	RNA polymerase Rpb1, domain 1; RNA polymerase, alpha...	0.05	OrthoFinder
OT_10G01340.1	No alias	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.04	OrthoFinder
PTI_12G01840.1	No alias	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
Sro544_g163690.1	Contig3214.g25423	DNA-directed RNA polymerase subunit beta' (Fragment)	0.01	OrthoFinder
Vocar.0018s0156.1	32898716	RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_002501986.1	MICPUN_82079, 82079	RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1,...	0.02	OrthoFinder
XM_002503483.1	MICPUN_94662, 94662	RNA polymerase Rpb1, domain 6; RNA polymerase Rpb1,...	0.03	OrthoFinder
lcl\|BLLF01001189.1_cds_GFH17710.1_12187	HaLaN_14398, GFH17710	DNA-directed RNA polymerase subunit	0.02	OrthoFinder
lcl\|LHPG02000005.1_cds_PRW58100.1_7994	PRW58100	DNA-directed RNA polymerase III largest subunit	0.02	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57000.1_9043	PRW57000	DNA-directed RNA polymerase II subunit 1	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Enrichment
CC	GO:0000151	ubiquitin ligase complex	IEP	Enrichment
MF	GO:0000166	nucleotide binding	IEP	Enrichment
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Enrichment
MF	GO:0004386	helicase activity	IEP	Enrichment
MF	GO:0004540	ribonuclease activity	IEP	Enrichment
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Enrichment
MF	GO:0005524	ATP binding	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
BP	GO:0005976	polysaccharide metabolic process	IEP	Enrichment
BP	GO:0005984	disaccharide metabolic process	IEP	Enrichment
BP	GO:0005991	trehalose metabolic process	IEP	Enrichment
BP	GO:0005992	trehalose biosynthetic process	IEP	Enrichment
BP	GO:0006073	cellular glucan metabolic process	IEP	Enrichment
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Enrichment
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Enrichment
BP	GO:0006077	(1->6)-beta-D-glucan metabolic process	IEP	Enrichment
BP	GO:0006078	(1->6)-beta-D-glucan biosynthetic process	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008170	N-methyltransferase activity	IEP	Enrichment
MF	GO:0008173	RNA methyltransferase activity	IEP	Enrichment
MF	GO:0008175	tRNA methyltransferase activity	IEP	Enrichment
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Enrichment
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Enrichment
BP	GO:0009057	macromolecule catabolic process	IEP	Enrichment
BP	GO:0009250	glucan biosynthetic process	IEP	Enrichment
BP	GO:0009311	oligosaccharide metabolic process	IEP	Enrichment
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Enrichment
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016758	hexosyltransferase activity	IEP	Enrichment
MF	GO:0017076	purine nucleotide binding	IEP	Enrichment
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Enrichment
MF	GO:0030554	adenyl nucleotide binding	IEP	Enrichment
MF	GO:0032553	ribonucleotide binding	IEP	Enrichment
MF	GO:0032555	purine ribonucleotide binding	IEP	Enrichment
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Enrichment
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Enrichment
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	Enrichment
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Enrichment
BP	GO:0044042	glucan metabolic process	IEP	Enrichment
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Enrichment
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Enrichment
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Enrichment
BP	GO:0046351	disaccharide biosynthetic process	IEP	Enrichment
MF	GO:0046527	glucosyltransferase activity	IEP	Enrichment
BP	GO:0051273	beta-glucan metabolic process	IEP	Enrichment
BP	GO:0051274	beta-glucan biosynthetic process	IEP	Enrichment
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Enrichment
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Enrichment
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Enrichment
MF	GO:0097367	carbohydrate derivative binding	IEP	Enrichment
CC	GO:0098797	plasma membrane protein complex	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
CC	GO:1902494	catalytic complex	IEP	Enrichment
CC	GO:1990234	transferase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007083	RNA_pol_Rpb1_4	776	822
IPR007080	RNA_pol_Rpb1_1	21	389
IPR000722	RNA_pol_asu	391	555
IPR007066	RNA_pol_Rpb1_3	569	718
IPR007081	RNA_pol_Rpb1_5	847	1276

External Links

No external refs found!

EOD21342

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation