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  5. Cpa|evm.model.tig00021017.6

Cpa|evm.model.tig00021017.6 (tig00021017_g17179.t1)


Aliases : tig00021017_g17179.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS19 component


Gene families : OG_01_0003297 (OrthoFinder) Phylogenetic Tree(s): OG0003297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021017.6
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre02.g106600 30784812, RPS19 Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder
Cz11g12080.t1 No alias Ribosomal protein S19e [Interproscan]. 0.12 OrthoFinder
Dusal.1308s00001.1 33194138 Ribosomal protein S19e [Interproscan]. 0.03 OrthoFinder
EOD40848 No alias Ribosomal protein S19e [Interproscan]. 0.11 OrthoFinder
OT_11G02460.1 No alias Ribosomal protein S19e [Interproscan]. 0.08 OrthoFinder
PTI_13G03570.1 No alias Ribosomal protein S19e [Interproscan]. 0.22 OrthoFinder
Sro345_g122470.1 Contig2266.g18806 40S ribosomal protein S19 0.26 OrthoFinder
SymbC1.scaffold2373.2 2373.2 Ribosomal protein S19e [Interproscan]. 0.03 OrthoFinder
TP05G07890.1 No alias Ribosomal protein S19e [Interproscan]. 0.22 OrthoFinder
Vocar.0006s0096.1 32894126 Ribosomal protein S19e [Interproscan]. 0.08 OrthoFinder
XM_002509176.1 MICPUN_107171, 107171 Ribosomal protein S19e [Interproscan]. 0.22 OrthoFinder
XM_003061489.1 MicpuC2_49693, 49693 Ribosomal protein S19e [Interproscan]. 0.09 OrthoFinder
lcl|BLLF01000010.1_cds_GFH05838.1_315 HaLaN_00368, GFH05838 Ribosomal protein S19e [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59438.1_7304 PRW59438 40S ribosomal S19-1 0.06 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8494467.1_2997 KAA8494467 40S ribosomal protein S19-1 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019725 cellular homeostasis IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042592 homeostatic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
BP GO:0045454 cell redox homeostasis IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001266 Ribosomal_S19e 10 144
No external refs found!