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Description : Light harvesting protein [Ensembl].
Gene families : OG_01_0000076 (OrthoFinder) Phylogenetic Tree(s): OG0000076_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EOD20809 | |
| Cluster | HCCA: Cluster_245 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre08.g365900 | 30773702, LHCSR1 | Photosynthesis.photophosphorylation.photosystem... | 0.02 | OrthoFinder | |
| PTI_01G10030.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_05G00320.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_14G03460.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| Sro101_g051590.1 | Contig348.g4712 | Fucoxanthin-chlorophyll a-c binding protein | 0.02 | OrthoFinder | |
| Sro1151_g246800.1 | Contig4710.g35031 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro1207_g252450.1 | Contig242.g2948 | B binding protein L1818, chloroplastic | 0.02 | OrthoFinder | |
| Sro122_g059170.1 | Contig71.g736 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro132_g062570.1 | Contig2745.g22100 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro1347_g264950.1 | Contig4640.g34581 | B binding protein 6, chloroplastic | 0.01 | OrthoFinder | |
| Sro1430_g271970.1 | Contig4579.g34184 | B binding protein L1818, chloroplastic | 0.03 | OrthoFinder | |
| Sro149_g068330.1 | Contig259.g3201 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro149_g068340.1 | Contig259.g3202 | B binding protein L1818, chloroplastic | 0.01 | OrthoFinder | |
| Sro1506_g278310.1 | Contig3888.g29862 | Chloroplastic | 0.03 | OrthoFinder | |
| Sro234_g094380.1 | Contig3223.g25485 | Fucoxanthin-chlorophyll a-c binding protein | 0.01 | OrthoFinder | |
| Sro2423_g327210.1 | Contig3569.g27581 | Chloroplastic | 0.03 | OrthoFinder | |
| Sro263_g102180.1 | Contig612.g7540 | Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic | 0.01 | OrthoFinder | |
| Sro288_g108750.1 | Contig62.g495 | B binding protein L1818, chloroplastic | 0.01 | OrthoFinder | |
| Sro412_g137900.1 | Contig2922.g23262 | Chloroplastic | 0.03 | OrthoFinder | |
| Sro453_g146050.1 | Contig1693.g15162 | B binding protein CP29 | 0.01 | OrthoFinder | |
| Sro60_g034620.1 | Contig797.g8939 | Chloroplastic | 0.02 | OrthoFinder | |
| Sro652_g181650.1 | Contig2024.g17318 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro656_g182410.1 | Contig256.g3152 | Chloroplastic | 0.04 | OrthoFinder | |
| Sro698_g189300.1 | Contig480.g6500 | Chlorophyll a | 0.01 | OrthoFinder | |
| Sro698_g189330.1 | Contig480.g6503 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro829_g208070.1 | Contig1016.g10166 | Chloroplastic | 0.01 | OrthoFinder | |
| Sro844_g209920.1 | Contig403.g5457 | Chloroplastic | 0.03 | OrthoFinder | |
| TP23G01260.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.03 | OrthoFinder | |
| TP23G01280.1 | No alias | Chlorophyll A-B binding protein [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8498066.1_7019 | KAA8498066 | Chlorophyll a-b binding protein of LHCII type III, chloroplastic | 0.02 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499797.1_8750 | KAA8499797 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.01 | OrthoFinder | |
| lcl|VRMN01000005.1_cds_KAA8493980.1_3844 | KAA8493980 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.01 | OrthoFinder | |
| lcl|VRMN01000009.1_cds_KAA8492420.1_9113 | KAA8492420 | Chlorophyll a-b binding protein 1B-21, chloroplastic | 0.01 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0005319 | lipid transporter activity | IEP | Enrichment |
| CC | GO:0005575 | cellular_component | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006869 | lipid transport | IEP | Enrichment |
| MF | GO:0008519 | ammonium transmembrane transporter activity | IEP | Enrichment |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | Enrichment |
| BP | GO:0010109 | regulation of photosynthesis | IEP | Enrichment |
| BP | GO:0010207 | photosystem II assembly | IEP | Enrichment |
| MF | GO:0010242 | oxygen evolving activity | IEP | Enrichment |
| BP | GO:0015696 | ammonium transport | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| BP | GO:0017038 | protein import | IEP | Enrichment |
| BP | GO:0022607 | cellular component assembly | IEP | Enrichment |
| CC | GO:0032991 | protein-containing complex | IEP | Enrichment |
| CC | GO:0032993 | protein-DNA complex | IEP | Enrichment |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | Enrichment |
| BP | GO:0042549 | photosystem II stabilization | IEP | Enrichment |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| CC | GO:0044815 | DNA packaging complex | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| BP | GO:0061024 | membrane organization | IEP | Enrichment |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Enrichment |
| BP | GO:0071702 | organic substance transport | IEP | Enrichment |
| BP | GO:0071705 | nitrogen compound transport | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0071949 | FAD binding | IEP | Enrichment |
| BP | GO:0120009 | intermembrane lipid transfer | IEP | Enrichment |
| MF | GO:0120013 | lipid transfer activity | IEP | Enrichment |
| CC | GO:1902494 | catalytic complex | IEP | Enrichment |
| CC | GO:1990204 | oxidoreductase complex | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 39 | 197 |
| No external refs found! |