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  5. Cpa|evm.model.tig00021017.29

Cpa|evm.model.tig00021017.29 (tig00021017_g17203.t1)


Aliases : tig00021017_g17203.t1

Description : Cell cycle.interphase.DNA replication.elongation.DNA-tracking platform.PCNA sliding clamp loader complex.RFC1 component


Gene families : OG_01_0002804 (OrthoFinder) Phylogenetic Tree(s): OG0002804_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00021017.29
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Cre12.g521200 30793594, RFC1 Cell cycle.interphase.DNA... 0.02 OrthoFinder
EOD33929 No alias Putative clamp loader replication factor C subunit 1 [Ensembl]. 0.05 OrthoFinder
OT_02G00510.1 No alias ATPase, AAA-type, core; DNA replication factor RFC1,... 0.02 OrthoFinder
Sro827_g207800.1 Contig2896.g23085 Factor C subunit 1 0.04 OrthoFinder
SymbC1.scaffold5212.2 5212.2 ATPase, AAA-type, core; DNA replication factor RFC1,... 0.02 OrthoFinder
XM_002502778.1 MICPUN_59230, 59230 BRCT domain; ATPase, AAA-type, core; DNA replication... 0.04 OrthoFinder
XM_003060896.1 MicpuC2_60700, 60700 DNA replication factor RFC1, C-terminal; ATPase,... 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58492.1_8174 PRW58492 Replication factor C subunit 1 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495911.1_1909 KAA8495911 Replication factor C subunit 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003689 DNA clamp loader activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005663 DNA replication factor C complex IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003747 translation release factor activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004721 phosphoprotein phosphatase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006415 translational termination IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008079 translation termination factor activity IEP Enrichment
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016791 phosphatase activity IEP Enrichment
BP GO:0022411 cellular component disassembly IEP Enrichment
MF GO:0030234 enzyme regulator activity IEP Enrichment
BP GO:0032984 protein-containing complex disassembly IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043624 cellular protein complex disassembly IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
MF GO:0098772 molecular function regulator IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1905369 endopeptidase complex IEP Enrichment
InterPro domains Description Start Stop
IPR013725 DNA_replication_fac_RFC1_C 847 1009
IPR003959 ATPase_AAA_core 588 674
No external refs found!