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  5. EOD20419

EOD20419


Description : Ribosomal protein S28e [Interproscan].


Gene families : OG_01_0003823 (OrthoFinder) Phylogenetic Tree(s): OG0003823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD20419
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.27 tig00000194_g14753.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 OrthoFinder
Cre12.g510450 30792329, RPS28 Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 OrthoFinder
Cz13g13220.t1 No alias Ribosomal protein S28e [Interproscan]. 0.07 OrthoFinder
OT_07G03760.1 No alias Ribosomal protein S28e [Interproscan]. 0.04 OrthoFinder
PTI_26G01600.1 No alias Ribosomal protein S28e [Interproscan]. 0.08 OrthoFinder
Sro2078_g313630.1 Contig3499.g27144 40S ribosomal protein S28 0.17 OrthoFinder
TP24G00120.1 No alias Ribosomal protein S28e [Interproscan]. 0.06 OrthoFinder
Vocar.0016s0208.1 32898111 Ribosomal protein S28e [Interproscan]. 0.04 OrthoFinder
XM_002507628.1 MICPUN_51733, 51733 Hypothetical protein (RPS28E) 0.04 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492075.1_5258 KAA8492075 40S ribosomal protein S28 0.02 OrthoFinder
lcl|VRMN01000023.1_cds_KAA8490545.1_5911 KAA8490545 40S ribosomal protein S28 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 68 129
No external refs found!