1. Home
  2. Species
  3. Emiliania huxleyi
  4. Sequence
  5. EOD19547

EOD19547


Description : WD40 repeat [Interproscan].


Gene families : OG_01_0002276 (OrthoFinder) Phylogenetic Tree(s): OG0002276_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD19547
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021721.26 tig00021721_g23228.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder
Cre10.g438700 30790009 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder
Cz06g14100.t1 No alias WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.1 OrthoFinder
Dusal.0249s00016.1 33195366 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.06 OrthoFinder
OT_14G00820.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.14 OrthoFinder
PTI_02G04550.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro1810_g299130.1 Contig2202.g18320 WD repeat domain 3 0.18 OrthoFinder
TP06G03730.1 No alias Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.06 OrthoFinder
Transcript_contig_56229 56229 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.06 OrthoFinder
XM_002505442.1 MICPUN_65501, 65501 WD40 repeat; Small-subunit processome, Utp12 [Interproscan]. 0.06 OrthoFinder
XM_003059717.1 MicpuC2_18664, 18664 Small-subunit processome, Utp12; WD40 repeat [Interproscan]. 0.07 OrthoFinder
lcl|BLLF01000640.1_cds_GFH13683.1_8160 HaLaN_09617, GFH13683 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59665.1_6392 PRW59665 WD repeat-containing 3 0.04 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497047.1_776 KAA8497047 U3 small nucleolar RNA-associated protein 12 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0001401 SAM complex IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008483 transaminase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0030488 tRNA methylation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
CC GO:0034708 methyltransferase complex IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
CC GO:0043527 tRNA methyltransferase complex IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 108 140
IPR001680 WD40_repeat 69 92
IPR001680 WD40_repeat 613 648
IPR001680 WD40_repeat 476 506
IPR001680 WD40_repeat 545 577
IPR001680 WD40_repeat 149 182
IPR001680 WD40_repeat 394 423
No external refs found!