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  5. EOD18277

EOD18277


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000905 (OrthoFinder) Phylogenetic Tree(s): OG0000905_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD18277
Cluster HCCA: Cluster_281

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000441.24 tig00021127_g18715.t1 Nucleolin 1 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder
Cre06.g275100 30778429 RNA biosynthesis.rRNA biogenesis.Nucleolin rDNA... 0.14 OrthoFinder
Cre10.g466450 30789814 No description available 0.04 OrthoFinder
Cz01g09300.t1 No alias RNA recognition motif domain [Interproscan]. 0.07 OrthoFinder
Cz08g29220.t1 No alias RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
Dusal.0054s00014.1 33201653 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
EOD17278 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
PTI_22G00530.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Sro402_g135470.1 Contig305.g4008 Stimulation factor subunit 2 tau variant 0.05 OrthoFinder
Sro656_g182510.1 Contig256.g3162 Splicing factor 3B subunit 4 0.07 OrthoFinder
Transcript_contig_57231 57231 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0002s0408.1 32891271 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002505110.1 MICPUN_102989, 102989 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_003060411.1 MicpuC2_60299, 60299 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01003640.1_cds_GFH27838.1_22315 HaLaN_26222, GFH27838 Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01004145.1_cds_GFH29022.1_23499 HaLaN_27610, GFH29022 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59230.1_7321 PRW59230 Nucleolin 1-like isoform X2 0.05 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58178.1_8002 PRW58178 RNA-binding domain-containing 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0000287 magnesium ion binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 216 281
IPR000504 RRM_dom 120 188
IPR000504 RRM_dom 317 386
No external refs found!