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  5. EOD17849

EOD17849


Description : DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000386 (OrthoFinder) Phylogenetic Tree(s): OG0000386_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD17849
Cluster HCCA: Cluster_199

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000865.28 tig00000865_g5079.t1 DExH-box ATP-dependent RNA helicase DExH12... 0.02 OrthoFinder
Cre17.g744147 30781910 RNA processing.RNA splicing.spliceosome... 0.01 OrthoFinder
Cz03g23200.t1 No alias Brr2, N-terminal helicase PWI domain; Sec63 domain;... 0.01 OrthoFinder
Dusal.0019s00002.1 33192520 Helicase, C-terminal; Sec63 domain; DEAD/DEAH box... 0.02 OrthoFinder
PTI_12G02760.1 No alias Sec63 domain; Helicase, C-terminal; Brr2, N-terminal... 0.02 OrthoFinder
Sro155_g070300.1 Contig395.g5337 DExH-box ATP-dependent RNA helicase DExH17 0.04 OrthoFinder
Vocar.0001s0791.1 32884296 DEAD/DEAH box helicase domain; Helicase, C-terminal;... 0.03 OrthoFinder
XM_002509189.1 MICPUN_98172, 98172 Helicase, C-terminal; Brr2, N-terminal helicase PWI... 0.01 OrthoFinder
lcl|BLLF01002113.1_cds_GFH22737.1_17214 HaLaN_20249, GFH22737 Brr2, N-terminal helicase PWI domain [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56130.1_10381 PRW56130 U5 small nuclear ribonucleo 200 kDa helicase-like 0.01 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497509.1_6462 KAA8497509 DExH-box ATP-dependent RNA helicase DExH17 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 31 213
No external refs found!