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  5. Cpa|evm.model.tig00020965.42

Cpa|evm.model.tig00020965.42 (tig00021501_g21945.t1)


Aliases : tig00021501_g21945.t1

Description : Histidine kinase 3 OS=Arabidopsis thaliana


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020965.42
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000788.34 tig00000788_g4091.t1 Ethylene receptor 1 OS=Pelargonium hortorum 0.04 OrthoFinder
Cpa|evm.model.tig00020660.25 tig00021501_g21945.t1 Probable histidine kinase 3 OS=Oryza sativa subsp. indica 0.03 OrthoFinder
Cpa|evm.model.tig00020660.46 tig00020660_g12547.t1 No description available 0.05 OrthoFinder
Cpa|evm.model.tig00020660.52 tig00020660_g12560.t1 No description available 0.03 OrthoFinder
Cre13.g571200 30784146 Probable histidine kinase 1 OS=Oryza sativa subsp. indica 0.02 OrthoFinder
Cre16.g678900 30778058 No description available 0.03 OrthoFinder
Sro346_g122750.1 Contig4731.g35102 Hybrid signal transduction histidine kinase J 0.02 OrthoFinder
lcl|BLLF01000478.1_cds_GFH12211.1_6688 HaLaN_07851, GFH12211 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01000625.1_cds_GFH13551.1_8028 HaLaN_09455, GFH13551 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01000788.1_cds_GFH14960.1_9437 HaLaN_11104, GFH14960 Hypothetical protein 0.02 OrthoFinder
lcl|BLLF01000788.1_cds_GFH14961.1_9438 HaLaN_11105, GFH14961 Signal transduction histidine kinase,... 0.02 OrthoFinder
lcl|BLLF01001425.1_cds_GFH19214.1_13691 HaLaN_16126, GFH19214 Signal transduction histidine kinase,... 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR001789 Sig_transdc_resp-reg_receiver 664 774
IPR003594 HATPase_C 362 466
No external refs found!