1. Home
  2. Species
  3. Cyanophora paradoxa
  4. Sequence
  5. Cpa|evm.model.tig00020965.22

Cpa|evm.model.tig00020965.22 (tig00020965_g16838.t1)


Aliases : tig00020965_g16838.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL8 component


Gene families : OG_01_0003494 (OrthoFinder) Phylogenetic Tree(s): OG0003494_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020965.22
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre12.g535851 30793369 Protein biosynthesis.cytosolic ribosome.large subunit... 0.32 OrthoFinder
Cz05g13020.t1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.17 OrthoFinder
Dusal.0446s00012.1 33201126 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.21 OrthoFinder
EOD38182 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.18 OrthoFinder
OT_04G01870.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.27 OrthoFinder
PTI_11G02510.1 No alias Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.35 OrthoFinder
Sro1384_g268110.1 Contig2234.g18573 60S ribosomal protein L8 0.44 OrthoFinder
TP14G02630.1 No alias Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.34 OrthoFinder
Vocar.0043s0070.1 32886882 Ribosomal protein L2, C-terminal; Ribosomal Proteins L2,... 0.12 OrthoFinder
XM_002504886.1 MICPUN_95460, 95460 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.36 OrthoFinder
XM_003060635.1 MicpuC2_49650, 49650 Ribosomal Proteins L2, RNA binding domain; Ribosomal... 0.12 OrthoFinder
lcl|BLLF01003547.1_cds_GFH27617.1_22094 HaLaN_25972, GFH27617 Ribosomal_L2_C domain-containing protein 0.05 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45027.1_1889 PRW45027 60S ribosomal L8 0.2 OrthoFinder
lcl|VRMN01000005.1_cds_KAA8494059.1_3923 KAA8494059 60S ribosomal protein L8 0.2 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
MF GO:0016881 acid-amino acid ligase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
InterPro domains Description Start Stop
IPR022666 Rbsml_prot_L2_RNA-bd_dom 37 113
IPR022669 Ribosomal_L2_C 121 247
No external refs found!