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  5. Cpa|evm.model.tig00020964.11

Cpa|evm.model.tig00020964.11 (tig00020964_g16782.t1)


Aliases : tig00020964_g16782.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.NOB1 endonuclease


Gene families : OG_01_0002649 (OrthoFinder) Phylogenetic Tree(s): OG0002649_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020964.11
Cluster HCCA: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Cre01.g031750 30788745 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder
Dusal.0174s00012.1 33196262 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.02 OrthoFinder
EOD32208 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.02 OrthoFinder
PTI_01G03580.1 No alias Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.03 OrthoFinder
Sro400_g135140.1 Contig1256.g11757 20S-pre-rRNA D-site endonuclease NOB1 0.02 OrthoFinder
TP07G06410.1 No alias Nin one binding (NOB1) Zn-ribbon-like; Ribonuclease, PIN... 0.02 OrthoFinder
Transcript_contig_89518 89518 Ribonuclease, PIN domain; Nin one binding (NOB1)... 0.01 OrthoFinder
XM_003061944.1 MicpuC2_3608, 3608 Nin one binding (NOB1) Zn-ribbon-like [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR033411 Ribonuclease_PIN 10 96
IPR014881 NOB1_Zn-bd 291 361
No external refs found!