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  5. EOD15883

EOD15883


Description : DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0001024 (OrthoFinder) Phylogenetic Tree(s): OG0001024_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD15883
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Cre12.g526850 30793359 DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana 0.03 OrthoFinder
EOD04929 No alias DEAD/DEAH box helicase domain [Interproscan]. 0.05 OrthoFinder
EOD33608 No alias Helicase, C-terminal [Interproscan]. 0.03 OrthoFinder
PTI_02G06960.1 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
Sro216_g089540.1 Contig227.g2731 RNA helicase DBP9 0.04 OrthoFinder
Transcript_contig_57632 57632 DEAD/DEAH box helicase domain [Interproscan]. 0.01 OrthoFinder
Transcript_contig_71372 71372 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 71 198
No external refs found!