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  5. EOD15797

EOD15797


Description : COPA1, alpha subunit of the coatomer [Ensembl].


Gene families : OG_01_0001822 (OrthoFinder) Phylogenetic Tree(s): OG0001822_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD15797
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
Cre13.g565850 30784724, COPA1 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder
Cz02g40250.t1 No alias Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Dusal.1106s00002.1 33203688 Coatomer, WD associated region [Interproscan]. 0.02 OrthoFinder
OT_04G01560.1 No alias Coatomer, WD associated region; Coatomer, alpha subunit,... 0.03 OrthoFinder
Sro669_g184560.1 Contig2091.g17828 Coatomer subunit alpha 0.05 OrthoFinder
TP06G03960.1 No alias Coatomer, alpha subunit, C-terminal; Coatomer, WD... 0.08 OrthoFinder
Transcript_contig_89172 89172 Coatomer, WD associated region; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Vocar.0028s0031.1 32895618 WD40 repeat; Coatomer, alpha subunit, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01001654.1_cds_GFH20541.1_15018 HaLaN_17680, GFH20541 Coatomer subunit alpha 0.02 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22099.1_16576 HaLaN_19510, GFH22099 Coatomer subunit alpha 0.01 OrthoFinder
lcl|BLLF01001969.1_cds_GFH22100.1_16577 HaLaN_19511, GFH22100 Coatomer subunit alpha 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58160.1_7595 PRW58160 Coatomer subunit alpha-1 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
CC GO:0030117 membrane coat IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0030118 clathrin coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030125 clathrin vesicle coat IEP Enrichment
CC GO:0030126 COPI vesicle coat IEP Enrichment
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
CC GO:0030132 clathrin coat of coated pit IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 126 163
IPR001680 WD40_repeat 45 79
IPR001680 WD40_repeat 84 121
IPR001680 WD40_repeat 226 259
IPR001680 WD40_repeat 269 304
IPR006692 Coatomer_WD-assoc_reg 394 791
No external refs found!