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  5. Cpa|evm.model.tig00020961.135

Cpa|evm.model.tig00020961.135 (tig00020961_g16755.t1)


Aliases : tig00020961_g16755.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS2 component


Gene families : OG_01_0002382 (OrthoFinder) Phylogenetic Tree(s): OG0002382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020961.135
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre01.g039250 30788560, RPS2 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder
Cz06g19150.t1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
Dusal.0108s00005.1 33189508 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
OT_17G01420.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.13 OrthoFinder
PTI_17G01720.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.16 OrthoFinder
Sro693_g188270.1 Contig3212.g25392 40S ribosomal protein S2 (Fragment) 0.17 OrthoFinder
TP10G03790.1 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.06 OrthoFinder
Vocar.0001s0807.1 32884773 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
XM_002502219.1 MICPUN_90856, 90856 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.05 OrthoFinder
XM_003063973.1 MicpuC2_49763, 49763 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.07 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39136.1_2764 PRW39136 40S ribosomal S2-4 0.06 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497763.1_6716 KAA8497763 40S ribosomal protein S2 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001514 selenocysteine incorporation IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006451 translational readthrough IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
MF GO:0030976 thiamine pyrophosphate binding IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:1901681 sulfur compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 253 319
IPR013810 Ribosomal_S5_N 170 234
No external refs found!