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  5. EOD13647

EOD13647


Description : DNA topoisomerase, type IA, zn finger; HNH endonuclease; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000314 (OrthoFinder) Phylogenetic Tree(s): OG0000314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD13647
Cluster HCCA: Cluster_226

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.60 tig00021168_g19126.t1 Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1... 0.02 OrthoFinder
Cz02g34030.t1 No alias HNH endonuclease; Helicase, C-terminal; SNF2-related,... 0.02 OrthoFinder
Sro352_g124160.1 Contig2645.g21392 Regulator of chromatin subfamily A-like protein 1 0.02 OrthoFinder
UNPLg00208.t1 No alias Helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
UNPLg00628.t1 No alias SNF2-related, N-terminal domain [Interproscan]. 0.02 OrthoFinder
Vocar.0020s0120.1 32886803 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.01 OrthoFinder
XM_003055085.1 MicpuC2_50566, 50566 SNF2 super family 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59719.1_6399 PRW59719 SWI SNF-related matrix-associated actin-dependent... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003916 DNA topoisomerase activity IEA Interproscan
MF GO:0004519 endonuclease activity IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004177 aminopeptidase activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006474 N-terminal protein amino acid acetylation IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008276 protein methyltransferase activity IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0016278 lysine N-methyltransferase activity IEP Enrichment
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
BP GO:0016571 histone methylation IEP Enrichment
BP GO:0017196 N-terminal peptidyl-methionine acetylation IEP Enrichment
BP GO:0018022 peptidyl-lysine methylation IEP Enrichment
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018206 peptidyl-methionine modification IEP Enrichment
MF GO:0030145 manganese ion binding IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
CC GO:0031414 N-terminal protein acetyltransferase complex IEP Enrichment
CC GO:0031417 NatC complex IEP Enrichment
BP GO:0034968 histone lysine methylation IEP Enrichment
MF GO:0042054 histone methyltransferase activity IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR002711 HNH 689 723
IPR001650 Helicase_C 206 301
IPR013498 Topo_IA_Znf 26 60
No external refs found!