EOD12874

Description : Chaperonin Cpn60/TCP-1 family [Interproscan].

Gene families : OG_01_0002786 (OrthoFinder) Phylogenetic Tree(s): OG0002786_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: EOD12874
Cluster	HCCA: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000615.79	tig00000615_g2609.t1	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.02	OrthoFinder
Cre10.g443250	30790418, CCT3	Cytoskeleton.actin and tubulin folding.CCT chaperonin...	0.05	OrthoFinder
Dusal.0076s00024.1	33195202	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.05	OrthoFinder
OT_13G03020.1	No alias	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.05	OrthoFinder
PTI_14G01600.1	No alias	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.02	OrthoFinder
Sro207_g086800.1	Contig755.g8583	Complex protein 1 subunit gamma	0.02	OrthoFinder
Sro68_g037860.1	Contig2027.g17367	Complex protein 1 subunit gamma	0.04	OrthoFinder
Transcript_contig_55587	55587	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.02	OrthoFinder
Vocar.0026s0092.1	32892456	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.04	OrthoFinder
XM_002503202.1	MICPUN_59360, 59360	Chaperonin	0.05	OrthoFinder
XM_003061220.1	MicpuC2_35033, 35033	Chaperonin Cpn60/TCP-1 family [Interproscan].	0.03	OrthoFinder
lcl\|BLLF01000095.1_cds_GFH07456.1_1933	HaLaN_02255, GFH07456	T-complex protein 1 subunit gamma	0.07	OrthoFinder
lcl\|BLLF01003645.1_cds_GFH27848.1_22325	HaLaN_26232, GFH27848	T-complex protein 1 subunit gamma	0.02	OrthoFinder
lcl\|LHPG02000004.1_cds_PRW59070.1_7315	PRW59070	T-complex 1 subunit gamma	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	Enrichment
BP	GO:0000077	DNA damage checkpoint signaling	IEP	Enrichment
CC	GO:0000151	ubiquitin ligase complex	IEP	Enrichment
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003729	mRNA binding	IEP	Enrichment
MF	GO:0003743	translation initiation factor activity	IEP	Enrichment
MF	GO:0003924	GTPase activity	IEP	Enrichment
MF	GO:0004175	endopeptidase activity	IEP	Enrichment
MF	GO:0004252	serine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004601	peroxidase activity	IEP	Enrichment
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Enrichment
MF	GO:0004827	proline-tRNA ligase activity	IEP	Enrichment
MF	GO:0005049	nuclear export signal receptor activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0005525	GTP binding	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005680	anaphase-promoting complex	IEP	Enrichment
CC	GO:0005685	U1 snRNP	IEP	Enrichment
CC	GO:0005730	nucleolus	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
CC	GO:0005783	endoplasmic reticulum	IEP	Enrichment
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Enrichment
BP	GO:0006082	organic acid metabolic process	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006376	mRNA splice site selection	IEP	Enrichment
BP	GO:0006399	tRNA metabolic process	IEP	Enrichment
BP	GO:0006413	translational initiation	IEP	Enrichment
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Enrichment
BP	GO:0006433	prolyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006979	response to oxidative stress	IEP	Enrichment
BP	GO:0007346	regulation of mitotic cell cycle	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008135	translation factor activity, RNA binding	IEP	Enrichment
BP	GO:0008150	biological_process	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008238	exopeptidase activity	IEP	Enrichment
MF	GO:0008483	transaminase activity	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
BP	GO:0009116	nucleoside metabolic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0010564	regulation of cell cycle process	IEP	Enrichment
BP	GO:0010948	negative regulation of cell cycle process	IEP	Enrichment
BP	GO:0010965	regulation of mitotic sister chromatid separation	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Enrichment
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Enrichment
MF	GO:0016874	ligase activity	IEP	Enrichment
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
BP	GO:0019752	carboxylic acid metabolic process	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Enrichment
BP	GO:0030071	regulation of mitotic metaphase/anaphase transition	IEP	Enrichment
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Enrichment
CC	GO:0030896	checkpoint clamp complex	IEP	Enrichment
MF	GO:0031369	translation initiation factor binding	IEP	Enrichment
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Enrichment
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	Enrichment
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
BP	GO:0033045	regulation of sister chromatid segregation	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0042770	signal transduction in response to DNA damage	IEP	Enrichment
BP	GO:0043038	amino acid activation	IEP	Enrichment
BP	GO:0043039	tRNA aminoacylation	IEP	Enrichment
BP	GO:0043436	oxoacid metabolic process	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0044281	small molecule metabolic process	IEP	Enrichment
MF	GO:0045182	translation regulator activity	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0045786	negative regulation of cell cycle	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0051726	regulation of cell cycle	IEP	Enrichment
BP	GO:0051983	regulation of chromosome segregation	IEP	Enrichment
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Enrichment
MF	GO:0070008	serine-type exopeptidase activity	IEP	Enrichment
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Enrichment
CC	GO:0072546	EMC complex	IEP	Enrichment
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
CC	GO:0097525	spliceosomal snRNP complex	IEP	Enrichment
CC	GO:0120114	Sm-like protein family complex	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Enrichment
CC	GO:0140513	nuclear protein-containing complex	IEP	Enrichment
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901657	glycosyl compound metabolic process	IEP	Enrichment
BP	GO:1901987	regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	Enrichment
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	Enrichment
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	IEP	Enrichment
BP	GO:1905818	regulation of chromosome separation	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/TCP-1	28	190

External Links

No external refs found!

EOD12874

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation