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  5. EOD12070

EOD12070


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0003158 (OrthoFinder) Phylogenetic Tree(s): OG0003158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD12070
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000893.5 tig00000893_g5348.t1 No description available 0.07 OrthoFinder
Cre16.g685200 30778004 No description available 0.11 OrthoFinder
Cz03g11190.t1 No alias RNA recognition motif domain [Interproscan]. 0.15 OrthoFinder
Dusal.0244s00016.1 33186516 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
OT_04G01770.1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
PTI_10G00250.1 No alias RNA recognition motif domain [Interproscan]. 0.16 OrthoFinder
Sro737_g195080.1 Contig1367.g12567 Multiple RNA-binding domain-containing protein 1 0.14 OrthoFinder
TP04G04110.1 No alias RNA recognition motif domain [Interproscan]. 0.06 OrthoFinder
Vocar.0042s0105.1 32892088 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
XM_002501431.1 MICPUN_81062, 81062 RNA recognition motif domain [Interproscan]. 0.11 OrthoFinder
XM_003057974.1 MicpuC2_16164, 16164 RNA recognition motif domain [Interproscan]. 0.05 OrthoFinder
lcl|BLLF01000341.1_cds_GFH10734.1_5211 HaLaN_06100, GFH10734 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58148.1_7665 PRW58148 Multiple RNA-binding domain-containing 1 0.09 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495392.1_1390 KAA8495392 Multiple RNA-binding domain-containing protein 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0003333 amino acid transmembrane transport IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003724 RNA helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042274 ribosomal small subunit biogenesis IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1903825 organic acid transmembrane transport IEP Enrichment
BP GO:1905039 carboxylic acid transmembrane transport IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 660 728
IPR000504 RRM_dom 19 83
IPR000504 RRM_dom 218 274
IPR000504 RRM_dom 557 630
No external refs found!