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  5. Cpa|evm.model.tig00020941.45

Cpa|evm.model.tig00020941.45 (tig00020941_g16237.t1)


Aliases : tig00020941_g16237.t1

Description : Probable histidine kinase 3 OS=Oryza sativa subsp. indica


Gene families : OG_01_0000006 (OrthoFinder) Phylogenetic Tree(s): OG0000006_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020941.45
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.59 tig00000254_g22474.t1 Ethylene receptor 1 OS=Brassica oleracea 0.03 OrthoFinder
Cpa|evm.model.tig00020554.106 tig00020554_g10883.t2 No description available 0.06 OrthoFinder
Cre02.g074150 30785488, COP5 Histidine kinase 5 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre17.g733150 30781867 Histidine kinase 3 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cz08g23120.t1 No alias Signal transduction response regulator, receiver domain;... 0.01 OrthoFinder
OT_09G02140.1 No alias Histidine kinase/HSP90-like ATPase; PAS domain; Signal... 0.02 OrthoFinder
OT_17G01290.1 No alias Archaeal/bacterial/fungal rhodopsins; Histidine... 0.01 OrthoFinder
Vocar.0001s0831.1 32884659 Archaeal/bacterial/fungal rhodopsins; Histidine... 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60699.1_4145 PRW60699 Hybrid sensor histidine kinase response regulator 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009584 detection of visible light IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003594 HATPase_C 1145 1259
IPR013515 Phytochrome_cen-reg 750 809
No external refs found!