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  5. EOD09087

EOD09087


Description : Helicase, C-terminal; Domain of unknown function DUF1605; Helicase-associated domain; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000129 (OrthoFinder) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD09087
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.35 tig00000215_g18570.t1 DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana 0.01 OrthoFinder
OT_03G04780.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
OT_06G02830.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Sro1790_g297740.1 Contig4724.g35072 DExH-box ATP-dependent RNA helicase DExH7, chloroplastic 0.02 OrthoFinder
Sro335_g119970.1 Contig3868.g29754 DExH-box ATP-dependent RNA helicase DExH1 0.02 OrthoFinder
Vocar.0002s0213.1 32890657 Domain of unknown function DUF1605; DEAD/DEAH box... 0.01 OrthoFinder
XM_002506086.1 MICPUN_88188, 88188 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
lcl|BLLF01003135.1_cds_GFH26457.1_20934 HaLaN_24609, GFH26457 Helicase, C-terminal; Helicase-associated domain [Interproscan]. 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 506 596
IPR011545 DEAD/DEAH_box_helicase_dom 38 207
IPR001650 Helicase_C 312 442
IPR011709 DUF1605 666 760
No external refs found!