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  5. Cpa|evm.model.tig00020927.50

Cpa|evm.model.tig00020927.50 (tig00020927_g15980.t1)


Aliases : tig00020927_g15980.t1

Description : RNA processing.RNA splicing.U6-associated LSm accessory ribonucleoprotein complex.LSm3 component


Gene families : OG_01_0004585 (OrthoFinder) Phylogenetic Tree(s): OG0004585_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020927.50
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
Cre16.g662300 30777721 RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder
EOD14715 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
PTI_28G00710.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro428_g140910.1 Contig2589.g21019 Sm-like protein LSm3 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496659.1_388 KAA8496659 U6 snRNA-associated Sm-like protein LSm3 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 14 90
No external refs found!