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  5. EOD08428

EOD08428


Description : Histone deacetylase 1 [Ensembl].


Gene families : OG_01_0000505 (OrthoFinder) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD08428
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000215.121 tig00000215_g18663.t1 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder
Cpa|evm.model.tig00001307.14 tig00001307_g8127.t1 Enzyme classification.EC_3 hydrolases.EC_3.5 hydrolase... 0.01 OrthoFinder
OT_02G02340.1 No alias Histone deacetylase domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55018 55018 Histone deacetylase domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0071949 FAD binding IEP Enrichment
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 27 314
No external refs found!