Cpa|evm.model.tig00020918.5 (tig00020918_g15883.t1)

Aliases : tig00020918_g15883.t1

Description : Cell cycle.interphase.DNA replication.preinitiation.MCM replicative DNA helicase complex.MCM6 component

Gene families : OG_01_0000321 (OrthoFinder) Phylogenetic Tree(s): OG0000321_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cpa\|evm.model.tig00020918.5
Cluster	HCCA: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
Cre03.g178650	30786765, MCM6	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.14	OrthoFinder
Cre10.g455850	30790894, MCM7	Cell cycle.interphase.DNA replication.preinitiation.MCM...	0.14	OrthoFinder
Cre12.g540927	30791701	Probable DNA helicase MCM9 OS=Arabidopsis thaliana	0.03	OrthoFinder
Cz01g28090.t1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain; Mcm6,...	0.05	OrthoFinder
Cz10g20280.t1	No alias	MCM N-terminal domain; MCM, AAA-lid domain; MCM OB...	0.06	OrthoFinder
EOD16317	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.04	OrthoFinder
EOD19125	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.04	OrthoFinder
EOD20267	No alias	MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan].	0.02	OrthoFinder
EOD29724	No alias	MCM OB domain; MCM, AAA-lid domain; MCM N-terminal...	0.03	OrthoFinder
OT_01G02550.1	No alias	MCM, AAA-lid domain; MCM OB domain; Mcm6, C-terminal...	0.1	OrthoFinder
OT_02G01820.1	No alias	MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;...	0.03	OrthoFinder
OT_05G01710.1	No alias	MCM, AAA-lid domain; MCM domain; MCM OB domain [Interproscan].	0.08	OrthoFinder
PTI_06G04900.1	No alias	MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan].	0.05	OrthoFinder
PTI_11G01130.1	No alias	MCM domain; MCM, AAA-lid domain; MCM OB domain [Interproscan].	0.02	OrthoFinder
TP05G04710.1	No alias	MCM, AAA-lid domain; MCM OB domain; MCM domain [Interproscan].	0.03	OrthoFinder
Transcript_contig_56242	56242	MCM domain; MCM N-terminal domain; MCM OB domain [Interproscan].	0.05	OrthoFinder
Transcript_contig_67540	67540	MCM, AAA-lid domain; MCM domain; MCM N-terminal domain;...	0.06	OrthoFinder
Vocar.0015s0342.1	32899062	MCM OB domain; MCM N-terminal domain; Mcm6, C-terminal...	0.03	OrthoFinder
Vocar.0028s0155.1	32895592	MCM, AAA-lid domain; MCM N-terminal domain; MCM OB...	0.02	OrthoFinder
lcl\|BLLF01001170.1_cds_GFH17581.1_12058	HaLaN_14243, GFH17581	DNA replication licensing factor MCM7	0.04	OrthoFinder
lcl\|BLLF01001600.1_cds_GFH20235.1_14712	HaLaN_17325, GFH20235	DNA helicase	0.04	OrthoFinder
lcl\|BLLF01002739.1_cds_GFH25166.1_19643	HaLaN_23090, GFH25166	DNA helicase	0.04	OrthoFinder
lcl\|LHPG02000007.1_cds_PRW57124.1_9129	PRW57124	DNA replication licensing factor MCM7	0.07	OrthoFinder
lcl\|LHPG02000018.1_cds_PRW33036.1_3726	PRW33036	DNA replication licensing factor Mcm6	0.04	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499259.1_8212	KAA8499259	DNA replication licensing factor mcm6	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Enrichment
MF	GO:0003689	DNA clamp loader activity	IEP	Enrichment
MF	GO:0003896	DNA primase activity	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005663	DNA replication factor C complex	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	Enrichment
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	Enrichment
BP	GO:0006231	dTMP biosynthetic process	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006260	DNA replication	IEP	Enrichment
BP	GO:0006270	DNA replication initiation	IEP	Enrichment
BP	GO:0006275	regulation of DNA replication	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
BP	GO:0008150	biological_process	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Enrichment
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Enrichment
BP	GO:0009129	pyrimidine nucleoside monophosphate metabolic process	IEP	Enrichment
BP	GO:0009130	pyrimidine nucleoside monophosphate biosynthetic process	IEP	Enrichment
BP	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process	IEP	Enrichment
BP	GO:0009162	deoxyribonucleoside monophosphate metabolic process	IEP	Enrichment
BP	GO:0009176	pyrimidine deoxyribonucleoside monophosphate metabolic process	IEP	Enrichment
BP	GO:0009177	pyrimidine deoxyribonucleoside monophosphate biosynthetic process	IEP	Enrichment
BP	GO:0009219	pyrimidine deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009221	pyrimidine deoxyribonucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009263	deoxyribonucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009265	2'-deoxyribonucleotide biosynthetic process	IEP	Enrichment
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Enrichment
BP	GO:0009889	regulation of biosynthetic process	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0010639	negative regulation of organelle organization	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
BP	GO:0019222	regulation of metabolic process	IEP	Enrichment
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Enrichment
MF	GO:0030234	enzyme regulator activity	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0031323	regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Enrichment
BP	GO:0032780	negative regulation of ATPase activity	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0033043	regulation of organelle organization	IEP	Enrichment
BP	GO:0033044	regulation of chromosome organization	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Enrichment
MF	GO:0042083	5,10-methylenetetrahydrofolate-dependent methyltransferase activity	IEP	Enrichment
CC	GO:0042555	MCM complex	IEP	Enrichment
BP	GO:0043086	negative regulation of catalytic activity	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043462	regulation of ATPase activity	IEP	Enrichment
BP	GO:0044092	negative regulation of molecular function	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046073	dTMP metabolic process	IEP	Enrichment
BP	GO:0046385	deoxyribose phosphate biosynthetic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0048519	negative regulation of biological process	IEP	Enrichment
BP	GO:0048523	negative regulation of cellular process	IEP	Enrichment
BP	GO:0050790	regulation of catalytic activity	IEP	Enrichment
BP	GO:0050794	regulation of cellular process	IEP	Enrichment
MF	GO:0050797	thymidylate synthase (FAD) activity	IEP	Enrichment
BP	GO:0051095	regulation of helicase activity	IEP	Enrichment
BP	GO:0051097	negative regulation of helicase activity	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:0051129	negative regulation of cellular component organization	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Enrichment
MF	GO:0061608	nuclear import signal receptor activity	IEP	Enrichment
BP	GO:0065009	regulation of molecular function	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	Enrichment
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
MF	GO:0098772	molecular function regulator	IEP	Enrichment
MF	GO:0140104	molecular carrier activity	IEP	Enrichment
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment
MF	GO:0140597	protein carrier activity	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
CC	GO:1905368	peptidase complex	IEP	Enrichment
CC	GO:1905369	endopeptidase complex	IEP	Enrichment
BP	GO:1905462	regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905463	negative regulation of DNA duplex unwinding	IEP	Enrichment
BP	GO:1905774	regulation of DNA helicase activity	IEP	Enrichment
BP	GO:1905775	negative regulation of DNA helicase activity	IEP	Enrichment
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:2001251	negative regulation of chromosome organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR033762	MCM_OB	152	280
IPR027925	MCM_N	42	145
IPR001208	MCM_dom	365	587

External Links

No external refs found!

Cpa|evm.model.tig00020918.5 (tig00020918_g15883.t1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation