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  5. Cpa|evm.model.tig00020912.17

Cpa|evm.model.tig00020912.17 (tig00020912_g15787.t1)


Aliases : tig00020912_g15787.t1

Description : RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex.Sm-D3 component


Gene families : OG_01_0000904 (OrthoFinder) Phylogenetic Tree(s): OG0000904_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00020912.17
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Cre06.g251300 30779242 RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 OrthoFinder
Cre10.g455300 30789915 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.04 OrthoFinder
Cz06g34330.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Dusal.0086s00033.1 33192754 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD07983 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
EOD19002 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
EOD28507 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
PTI_15G00690.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro305_g112890.1 Contig560.g7130 Ribonucleoprotein Sm D3 0.01 OrthoFinder
Sro479_g151180.1 Contig1858.g16253 Ribonucleoprotein Sm D3 0.02 OrthoFinder
TP13G00410.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
Transcript_contig_59145 59145 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
UNPLg00366.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
XM_003056196.1 MicpuC2_31243, 31243 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59229.1_7217 PRW59229 Small nuclear ribonucleo Sm D3 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0034464 BBSome IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 9 72
No external refs found!