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  5. EOD06519

EOD06519


Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].


Gene families : OG_01_0000285 (OrthoFinder) Phylogenetic Tree(s): OG0000285_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EOD06519
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000605.2 tig00000605_g2468.t1 DNA repair and recombination protein RAD54 OS=Oryza... 0.01 OrthoFinder
Cpa|evm.model.tig00020912.86 tig00000489_g1357.t1 Protein CHROMATIN REMODELING 20 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre03.g189000 30787481 Chromatin organisation.chromatin remodeling... 0.01 OrthoFinder
Dusal.0033s00033.1 33202502 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder
Dusal.0476s00007.1 33198117 SNF2-related, N-terminal domain; Helicase, C-terminal... 0.01 OrthoFinder
Sro116_g057000.1 Contig2228.g18476 ISWI chromatin-remodeling complex ATPase ISW2 0.01 OrthoFinder
Sro1230_g254580.1 Contig3922.g30049 Transcriptional regulator ATRX 0.02 OrthoFinder
Sro795_g203520.1 Contig372.g5045 DNA repair and recombination protein RAD54-like (Fragment) 0.02 OrthoFinder
Vocar.0035s0038.1 32896789 Helicase, C-terminal; SNF2-related, N-terminal domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 632 736
IPR000330 SNF2_N 245 590
No external refs found!